No php config files found

We are running several drupal sites on our linode and over the weekend, a coworker updated some packages on webmin. Now webmin cannot find any configuration files. So when you go to one of our sites, you get a blank page and the url won't resolve.

These are the paths given:

/etc/php5/apache/php.ini=Configuration for mod_php

/etc/php5/cgi/php.ini=Configuration for scripts run via CGI

/etc/php5/cli/php.ini=Configuration for command-line scripts

I changed the first line to

/etc/php5/apache2/php.ini=Configuration for mod_php and that seemed to grab the php.ini file and that's where the file was showing up in my directory. However, php is still not working. What are some other things I can look at to make this work?

raspberryheaven